PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G220900.1
Common NameB456_002G220900, LOC105786151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 211aa    MW: 23100.1 Da    PI: 4.783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G220900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-182777155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Gorai.002G220900.1 27 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 77
                        59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-352891IPR001471AP2/ERF domain
PfamPF008471.1E-112877IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-192886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-302886IPR001471AP2/ERF domain
PROSITE profilePS5103221.8122885IPR001471AP2/ERF domain
PRINTSPR003671.4E-82940IPR001471AP2/ERF domain
CDDcd000187.22E-193187No hitNo description
PRINTSPR003671.4E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVKRDQQKIL QAEASKQMTP SSSSCKKKYK GVRMRSWGSW VSEIRAPNQK TRIWLGSYST  60
PEAAARAYDA ALLCLKGSSA SLNFPNTSLD YIPDAIMSPK SIQRVAAAAA ANSFPDNGIS  120
SSTTAPVSPT PSSLVSSPSM ASSPSDQVDD VSLIQSLESI SMMEPWYTSF DDLQSPKYID  180
QMFNLVPFDP PTVMDDFYEE LSDIRLWSFP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167763e-73JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467927.11e-151PREDICTED: ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE41e-47ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0D2QGY01e-151A0A0D2QGY0_G
STRINGPOPTR_0002s08610.11e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2836133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-33ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]